Qtlhot Tutorial7 months ago
Motivation | Overview | Basic functionality with No Real Hotspots | Example with Uncorrelated Phenotypes | References
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Causal Model Selection Hypothesis Tests in Systems Genetics: \ a tutorial7 months ago
Motivation | Overview | Basic functionality | Other Functions | References
R/qtl2pattern Vignette5 years ago
Download of Diversity Outbred Example Data | SNP Association Mapping near Peak | Strain Distribution Pattern (SDP) Scan | SDP Pattern Scan | SDP Effects Scan | 36 Allele Pair Scan | Effect estimates | SNP features and Gene action | Gene and exon scan | Database Query and Large Crosses
R/qtl2ggplot Vignette5 years ago
Whole Genome Allele Scan | Genome Allele Scan for Chr 2 | Scan chromosome and summarize peak | Examine coefficients for the 8 alleles | SNP Association Mapping | Strain Distribution Pattern (SDP) Scan | Genes in Peak Region | Multiple Phenotypes | Genome scans for multile phenotypes | SNP scans for multiple phenotypes | SDP scans for multiple phenotypes | LOD peaks for multiple phenotypes | Coefficients for multiple phenotypes | Coefficients for 36 allele pairs
